Find Cheapest Airlines Flying from Manila to El Nido

Choose from 2 airlines fly from Manila to El Nido, including AirSWIFT AirLine, Cebu Pacific, Cebu Pacific has lowest fares on this route.
Airlines are determined based on actual purchased flight tickets from Manila to El Nido according to previous 12 months data from Trip.com.

Explore the cheapest flights from Manila to El Nido in the next three months. Based on Trip.com's data from the latest 7 days, one-way direct flights start at AU$ 101, and round-trip direct tickets start at AU$ 289.

Displayed flight fares from Manila to El Nido are based on average prices across airlines for the next 3 months, according to the latest Trip.com database.

Manila to El Nido Flight Details

The distance between Manila and El Nido is approximately 407.3km. It takes around 1 hour 30 minutes on average to fly from Manila to El Nido. Based on Trip.com's data travel demand peaks in July. The off-season for travel is November.

Cheapest one-way flight priceAU$ 101
Cheapest return ticket priceAU$ 289
Off-season for travelNovember
Peak season for travelJuly
Flight distance407.3km
Average flight time1 hour 30 minutes
Popular airlineAirSWIFT AirLine
Flight statistics for the Manila–El Nido route are based on aggregated booking data from Trip.com over the past 12 months.

Trip.com Price Insights on Flights from Manila to El Nido

What is the cheapest month for one-way flights from Manila to El Nido?

Average price of one-way flights from Manila to El Nido purchased by Trip.com users by month over the past 12 months

According to Trip.com's data, the cheapest month for flights from Manila to El Nido is Oct, with an average price of AU$ 177. Conversely, the most expensive month is typically Feb, with an average price of up to AU$ 284.

AU$ 284
AU$ 231
AU$ 177
AU$ 124
    Cheapest
  • AU$ 270
    Jan
  • AU$ 284
    Feb
  • AU$ 268
    Mar
  • AU$ 255
    Apr
  • AU$ 242
    May
  • AU$ 216
    Jun
  • AU$ 197
    Jul
  • AU$ 202
    Aug
  • AU$ 186
    Sep
  • AU$ 177
    Oct
  • AU$ 234
    Nov
  • AU$ 246
    Dec

What is the cheapest month for return flights from Manila to El Nido?

Average price of return flights from Manila to El Nido purchased by Trip.com users by month over the past 12 months

According to Trip.com's data, the cheapest month for flights from Manila to El Nido is Sep, with an average price of AU$ 376. Conversely, the most expensive month is typically Apr, with an average price of up to AU$ 592.

AU$ 592
AU$ 484
AU$ 376
AU$ 268
    Cheapest
  • AU$ 526
    Jan
  • AU$ 500
    Feb
  • AU$ 546
    Mar
  • AU$ 592
    Apr
  • AU$ 496
    May
  • AU$ 408
    Jun
  • AU$ 380
    Jul
  • AU$ 380
    Aug
  • AU$ 376
    Sep
  • AU$ 408
    Oct
  • AU$ 468
    Nov
  • AU$ 501
    Dec

What's the cheapest day to fly from Manila to El Nido?

Data is based on the average flight price for each day of the week from Manila to El Nido on Trip.com over the past 12 months.

Based on Trip.com data from the past 12 months, the cheapest day to fly from Manila to El Nido is Sun, with average prices lower than on other days. Avoid Mon, as prices are usually highest then.

AU$ 271
AU$ 263
AU$ 255
AU$ 246
    Cheapest
  • AU$ 271
    Mon
  • AU$ 257
    Tue
  • AU$ 270
    Wed
  • AU$ 260
    Thu
  • AU$ 269
    Fri
  • AU$ 258
    Sat
  • AU$ 254
    Sun

Flight FAQs

  • Which airlines offer the cheapest flights from Manila (MNL) to El Nido (ENI)?

    Based on Trip.com data, Cebu Pacific offers one-way fares as low as AU$ 101 on Cheapest nonstop routes (e.g. MNL to ENI on Sun, Jan 18), while AirSWIFT AirLine offers Cheapest nonstop round-trips from AU$ 289 departing on Wed, Mar 4 and returning on Sun, Mar 8.
  • At the moment, you can catch a direct flight from Manila to El Nido with the following airlines, including: AirSWIFT AirLine Selected airlines are based on historical data collected from flight bookings users made on Trip.com within the last 90 days.
  • It takes about 1 hour 30 minutes to fly from Manila (MNL) to El Nido (ENI).
  • By analyzing data from all airlines on the Trip.com flight calendar, it looks like the best time to book a flight from Manila to El Nido is around 40 days (6 weeks) in advance, and the best time to fly is usually on Tuesday, Wednesday, and Saturday. Tuesday typically offers the cheapest flights for departure, while Saturday offers the best return deals.
  • Based on Trip.com data in the past 4 weeks, there is 49 flight per week flying from Manila to El Nido. You can check the weekly schedule for popular airlines on this route below: AirSWIFT AirLine: S/M/T/W/T/F/S -- T65176 (10:29) AirSWIFT AirLine: S/M/T/W/T/F/S -- T65174 (13:58) AirSWIFT AirLine: S/M/T/W/T/F/S -- T65112 (05:24)
  • To find best deals on flights from Manila to El Nido, you can use various tools on Trip.com:
    · Be flexible with your travel dates to get the cheapest flight deal. Now the cheapest flight deal is on Sun, Jan 18, with one-way flights priced at just AU$ 101.
    · Compare airlines strategically. Budget carriers often provide the lowest base fares, while we found the most affordable airline currently operating on this route is Cebu Pacific.
    · Set up price alerts to easily monitor ticket prices without having to check every day.
    · Check Trip.com flight deals and promo codes frequently.
    · Avoid peak season unless you book very early. It seems the peak season for El Nido travel is around July.
    · Get exclusive promo codes for Trip.com app users.
  • The cheapest months to fly from Manila to El Nido is November, when demand for travel is lower.
  • After crunching the numbers on our January flight calendar, it's currently cheapest to fly from Manila to El Nido on January 13, 2026 with Cebu Pacific, with prices starting at AU$ 96.
  • You can land at any one of the following hubs in El Nido, with Ninoy Aquino International Airport to El Nido Airport (MNL-ENI) is by far the most common option on this route: El Nido Airport (ENI).
  • The time difference between El Nido and Manila is 0h.
  • Tickets can only be changed or cancelled if permitted by airline policy. To submit a change or cancellation request, go to the flight bookings page, select the option to change or cancel your booking, choose the relevant passengers and segment, and submit a request. Please note that additional charges may apply according to the airline ticket policy. However, if the flight has been rescheduled and you would like to change or cancel your ticket, you can submit an involuntary cancellation request. For more details about change and cancellation policies, please check the customer support pages.