Flagstaff

Boutique Hotels in Flagstaff

Enter your dates to find boutique hotels in Flagstaff.

Scroll down to see hotels
Filter by:
Hotel Star Rating
≤2345
Guest Rating
Amazing 9+Great 8+Good 7+Pleasant 6+

Top Boutique Hotels in Flagstaff

Browse top boutique hotels in Flagstaff known for their distinct style and personality.
Most Booked
Lowest price
Closest to downtown
Highest Rated
99+
Hotels in Flagstaff
Featured facilities: Swimming Pool, Bar, Restaurant
Great
103 reviews
9.0/10
1 night
From € 89
Check Availability
99+
Hotels in Flagstaff
With a stay at Bespoke Inn Flagstaff in Flagstaff (Downtown Flagstaff), you'll be within a 5-minute drive of Northern Arizona University and Lowell Observatory. This hotel is 14.2 mi (22.9 km) from Oak Creek Canyon and 9.3 mi (15 km) from Walnut Canyon National Monument. Make use of convenient amenities, which include complimentary wireless internet access and a fireplace in the lobby. Featured amenities include express check-in, express check-out, and luggage storage. Free self parking is available onsite. Stay in one of 9 guestrooms featuring flat-screen televisions. Your pillowtop bed comes with premium bedding. Complimentary wireless internet access keeps you connected, and satellite programming is available for your entertainment. Private bathrooms have designer toiletries and hair dryers.

"Had a great stay here! Room was really comfortable!"
Amazing
102 reviews
9.5/10
1 night
From € 203
Check Availability
99+
Hotels in Flagstaff
Featured facilities: Bar, Restaurant
Great
131 reviews
9.1/10
1 night
From € 74
Check Availability
99+
Hotels in Flagstaff
Featured facilities: Swimming Pool, Bar, Restaurant
Very Good
119 reviews
8.7/10
1 night
From € 105
Check Availability
53
Hotels in Flagstaff
Featured facilities: Swimming Pool, Bar, Restaurant
Great
91 reviews
9.3/10
1 night
From € 69
Check Availability
22
Hotels in Flagstaff
Welcome to your perfect Northern Arizona stay! Our spacious and inviting 3-bedroom, 3-bathroom townhouse is designed for comfort, connection, and mountain charm. Whether you're here for outdoor adventure or just to escape the AZ heat, this home has everything your family needs for a summer getaway. 3 Bedrooms | 3 Bathrooms | Quiet Neighborhood | Mountain ViewsSettle into a warm, thoughtfully designed home featuring an open-concept living area, comfortable furnishings, and a cozy gas fireplace—perfect for relaxing after a day of exploring. The fully stocked kitchen makes it easy to cook meals for the whole group, with everything you need right at your fingertips. Enjoy access to a 2-car garage, full-size washer and dryer, and high-speed WiFi throughout. Sleep Comfortably (Up to 8 Guests)Each bedroom is designed with comfort in mind, offering cozy beds, 100% cotton linens, and plenty of space for everyone to unwind. Master bedroom includes a grand king-size bed, smart TV, private balcony, walk-in closet, and en-suite bathroom. Second bedroom includes a queen-size bed. Third bedroom includes a twin-over-full bunk bed with stairs. All bedrooms located upstairs. Outdoor Living You’ll LoveStep outside to your private outdoor space, complete with a gas grill and fire table—ideal for evening gatherings under the stars. Enjoy your morning coffee or sunset views from the private balcony overlooking the mountains.Perfect for FamiliesWith plenty of space to spread out, kid-friendly comfort, and a welcoming atmosphere, this home is ideal for families traveling together. We provide a pack-n-play sleeper, high chair, kid-friendly dishware, and a variety of toys and games for the whole family. Prime LocationEnjoy easy access to all that Flagstaff has to offer—from hiking and biking trails to downtown shops and dining. You’re also within reach of incredible destinations like Grand Canyon National Park and Sedona, making this a perfect home base for your Northern Arizona adventures.Your mountain getaway awaits — book your stay today!License:Flagstaff STR Registration No. STR-049236 | State Transaction Privilege Tax License No. TPT-21551037About pets:No pets allowed.About checkOut:Check out before 10:00 AM.About children:Children allowed: ages 0-17.About checkIn:Check in after 4:00 PM.About smoking:Smoking is not permitted.About events:No events allowed.
Outstanding
65 reviews
9.8/10
Check Availability
30
Hotels in Flagstaff
With a stay at this cottage in Flagstaff, you'll be a 4-minute drive from Northern Arizona University and 8 minutes from Lowell Observatory. This cottage is 15.8 mi (25.4 km) from Arizona Snowbowl and 1.7 mi (2.7 km) from Aspen Valley Golf Club. This smoke-free cottage offers complimentary parking nearby and games. Free self parking is available onsite. Make yourself comfortable in this air-conditioned cottage, featuring a kitchen with an oven and a stovetop. There's a private balcony. Conveniences include a desk and a microwave.
Amazing
3 reviews
9.7/10
1 night
From € 92
Check Availability
33
Hotels in Flagstaff
Welcome to Pine Haven – a Cloud Nine Stays property! Located just 4 miles from downtown Flagstaff and Heritage Square, this family-friendly home offers endless entertainment and relaxation. Enjoy the hot tub, fully stocked game room with arcade games, ping pong, and a home gym. With 5 spacious bedrooms and 3 bathrooms, there’s room for everyone to unwind. Cozy up by the fire pit or venture out to explore Flagstaff’s natural beauty. Make memories in the perfect blend of adventure and comfort!Our favorite things about the home are:☀ 5 bedrooms: 2 king, 2 queen and 4 twin beds ☀ Fully stocked kitchen ☀ Living room with HDTV perfect for watching any game or movie☀ Arcade and board games for family fun☀ Outdoor fire pit, grill and dining table☀ Relaxing hot tub under the stars☆☆ BEDROOMS ☆☆With five bedrooms and 3 full baths, there’s space to comfortably accommodate 12 people. On the main floor, there’s a bedroom with queen bed. Upstairs, you’ll find four twin beds in a trundle bed setting, a queen bed and two king beds with one being the primary bedroom that includes an ensuite bathroom.☆☆ BATHROOMS ☆☆In the primary bedroom, you’ll find a stand up shower and a jacuzzi tub to fully indulge and relax while on vacation. We do provide moisturizing shampoo, conditioner, and body wash in all bathrooms.In the bathroom downstairs you'll find a rainfall stand up shower, while an upstairs bathroom includes a tub/shower combo, so you can choose how you want to wash up after a day of fun! ☆☆ KITCHEN & LIVING ROOM ☆☆This kitchen is the perfect place to whip up delicious meals. You’ll have all the kitchen essentials to make your family's favorite dishes and more. Enjoy a cup of coffee in the morning in the dining area or take a seat at the bar with your friends and family. The living room is the perfect place to relax after a day of exploring Flagstaff. With a gas fireplace and plush seating, it’s an ideal spot for snuggling up for movie nights or enjoying a quiet evening together.☆☆ OUTSIDE SPACE ☆☆The patio invites you to gather around the dining table for memorable meals made with the outdoor grill. Step a little farther, and you’ll discover a cozy setup complete with a gas fire pit and a soothing hot tub. Unwind in this inviting space and enjoy starlit evenings—truly the perfect way to end any day.For those looking to keep up with their fitness routine, the garage offers a selection of workout equipment – perfect for energizing mornings!☆☆DISTANCE TO OTHER POPULAR ATTRACTIONS☆☆- 2-4 miles to downtown Flagstaff: Heritage Square, Lowell Observatory, Riordan Mansion State Historic Park, Northern Arizona University, Flagstaff Visitor Center- 15 miles to Walnut Canyon National Monument- 18 miles to Arizona Snowbowl- 23 miles to Sunset Crater Volcano National Monument- 27 miles to SedonaAbout pets:No pets allowed.About checkOut:Check out before 11:00 AM.About children:Children allowed: ages 0-17.About checkIn:Check in after 4:00 PM.About smoking:Smoking is not permitted.About minBookingAge:Minimum age to rent: 21.About events:No events allowed.
Outstanding
29 reviews
10/10
Check Availability
37
Hotels in Flagstaff
Welcome to your perfect Flagstaff getaway — where comfort meets adventure!This spacious 3-bedroom, 3.5-bath retreat comfortably sleeps up to 10 guests and is designed for families, groups, and remote workers alike. Nestled in the sought-after Ponderosa Trails neighborhood, you’ll enjoy the peace of the forest while staying minutes from Flagstaff’s best restaurants, breweries, and hiking trails. Step inside and feel right at home. The open living area features cozy furnishings, two fireplaces, and plenty of natural light.Bedrooms:– King suite with private bath– Queen bedroom– Double bunk bed with twin trundle– Two additional sofa beds (loft + basement)Bathrooms: 3.5 total — each modern, clean, and well-stocked with essentials. Entertainment for EveryoneThe walk-out basement is a dream hangout zone — complete with a pool table, ping-pong, darts, big-screen TV, and plenty of board games for family nights.Upstairs, the loft workspace includes a desk, dual monitors, and printer — ideal for guests balancing work and play. Extras You’ll Love• Fully equipped home gym• New A/C system for summer comfort• Fire pit, zip line, hammock, and outdoor dining area• Sledding right in the backyard during snowy months! Location Highlights– Minutes to Flagstaff Urban Trail, parks & pickleball courts– Close to downtown, NAU, and Lowell Observatory– Enjoy night-sky views, breweries, and local tours nearby Why You’ll Love ItWhether you’re exploring Flagstaff’s hiking trails, enjoying a snowy winter getaway, or working remotely among the pines, this home truly has it all — space, comfort, fun, and nature.Book your stay today and make this your home away from home in Flagstaff!About pets:No pets allowed.About checkOut:Check out before 11:00 AM.About children:Children allowed: ages 0-17.About checkIn:Check in after 4:00 PM.About smoking:Smoking is not permitted.About minBookingAge:Minimum age to rent: 25.About events:No events allowed.
Outstanding
4 reviews
10/10
Check Availability
48
Hotels in Flagstaff
"The Perch" says it all. This well appointed mountain modern gem is located a few minutes walk through the woods from the historic Lowell Observatory and a few more minutes from down town Flagstaff. Perhaps one of the best views in town.The unit has its own private entrance, a full kitchen with dishwasher, refrigerator, coffee maker, and microwave, separate bedroom with new mattress and bedding, Smart TV with many streaming and on-air apps, all new shower and fixtures in the bathroom, in-floor heating and on-site parking right at the base of the exterior stairs. Large table in the dining area also create various options to make yourself at home.Original restored windows frame the view from the living area that has a queen size sofa bed with a top-rated new memory-foam mattress. There is also a new single roll-away bed that makes a comfortable arrangement for family stays. Plentiful bedding is provided for all sleeping options.Lowell Observatory is a few minutes walk through the trees, as well as frisbee golf and Thorpe Park with a children's playground and tennis courts. Host lives on site and can help with suggestions for places to eat or things to do.Whether you are on a quick stop-over or on a Northern Arizona extended adventure to see the sites of the Grand Canyon, Sedona or skiing at the AZ Snow Bowl, we are confident your stay at The Perch will be a memorable part of your visit.About pets:No pets allowed.About checkOut:Check out before 10:00 AM.About children:Children allowed: ages 0-17.About checkIn:Check in after 3:00 PM.About smoking:Smoking is not permitted.About minBookingAge:Minimum age to rent: 21.About events:No events allowed.
Outstanding
128 reviews
10/10
Check Availability
Show more Boutique hotels in Flagstaff

FAQs

What are the best pet-friendly hotels in Flagstaff?

What are some good hotels near Northern Arizona University in Flagstaff?

For Flagstaff hotels near Northern Arizona University, many travelers recommend Baymont by Wyndham Flagstaff (from € 47), Hilton Garden Inn Flagstaff (from € 96) and La Quinta Inn & Suites by Wyndham Flagstaff (from € 85) for their great location and service.

What are the must-visit spots in Flagstaff?

Flagstaff is home to iconic landmarks such as Northern Arizona University.